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Hospital-based screening yields 18% CRE colonization prevalence, 20% with universal screeningHospital settings show higher CRE colonization rates than community locations

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Key Takeaway
Consider that hospital-based screening identifies higher CRE colonization rates than community-based approaches, informing targeted surveillance strategies.

This systematic review and meta-analysis synthesized data from 89 studies encompassing 116,743 participants across healthcare and community settings. The review compared hospital-based versus community-based screening and universal versus targeted or systematic sampling approaches for carbapenem-resistant Enterobacteriaceae (CRE) colonization. The primary outcome was the pooled CRE colonization prevalence.

The main result was a pooled CRE colonization prevalence of 14% (95% CI: 11%-18%). The analysis showed significant heterogeneity, with an I² of 99.96%. Prevalence varied by year, peaking at 33% in 2017 and declining to 8% in 2023. Geographic variability was substantial, with Vietnam having the highest prevalence (43%) and the United States the lowest (5%).

Prevalence also differed by setting and screening method. Hospital-based screening yielded a prevalence of 18%, and universal screening yielded 20%. These were higher than community-based screening (3%) and targeted or systematic sampling (3%-15%). In meta-regression, hospital setting was the only significant predictor of higher prevalence (coefficient = 0.14, P = .009).

The most common organisms were Klebsiella pneumoniae (52.8%) and Escherichia coli (44.9%). The predominant carbapenemase genes were NDM (45.6%) and OXA-type (36.3%). The review did not report safety or tolerability data, as the studies were observational.

Key limitations included substantial geographic and methodological variability, contributing to the high heterogeneity. The review did not report funding sources or conflicts of interest. The causality note specifies that the association between hospital setting and higher prevalence is based on a meta-regression coefficient and does not imply direct causation.

These results compare to prior landmark studies by highlighting the global burden of CRE colonization and the importance of setting-specific surveillance. The declining trend from 2017 to 2023 may reflect improved infection control, but the data are observational.

Clinical implications include the need for standardized surveillance and targeted control strategies, with molecular surveillance essential to monitor resistance determinant evolution. Practice decisions should account for the high variability in reported rates.

Unanswered questions include the drivers of the declining prevalence trend, optimal screening protocols for different settings, and the impact of specific carbapenemase genes on clinical outcomes.

Carbapenem-resistant Enterobacteriaceae, or CRE, are bacteria that can cause serious infections. These bacteria are resistant to carbapenems, which are powerful antibiotics. When these bacteria live on a person without causing illness, it is called colonization. This can be a risk for future infections. Understanding where these bacteria are most common helps health officials plan better strategies to stop their spread. This research matters to patients, families, and healthcare workers who want to know how to stay safe from drug-resistant germs. It also helps hospitals and clinics decide how to screen for these bacteria effectively.

Researchers combined data from 89 different studies to get a clear picture. These studies included a total of 116,743 participants. The participants were found in both health care settings, like hospitals, and community settings, like homes or outpatient clinics. The researchers looked at how often CRE colonization happened in these different places. They also checked if the rate changed over time or varied by country. They wanted to see if the way people were tested affected the results.

The main finding was that the overall rate of CRE colonization was 14%. This number varies widely depending on the location. In hospital settings, the rate was 18%. When hospitals used universal screening, the rate was 20%. In community settings, the rate was much lower at 3%. The study found that the hospital setting was the only factor that significantly predicted higher rates. The rate peaked at 33% in 2017 but declined to 8% in 2023. This drop suggests that efforts to control these bacteria are working in some places.

The study also looked at which bacteria were most common. Klebsiella pneumoniae made up 52.8% of the cases, while Escherichia coli made up 44.9%. The researchers also checked for specific genes that make bacteria resistant to drugs. The NDM gene was found in 45.6% of cases, and OXA-type genes were found in 36.3%. Rates varied greatly by country, with Vietnam having the highest rate at 43% and the US having the lowest at 5%. The study noted that the way studies were done also varied, which made comparing results difficult.

Because this was a meta-analysis, it combines many smaller studies. This gives a broad view but can hide details about specific patients. The study did not report safety concerns because it looked at colonization, not treatment. Colonization means the bacteria are present, but it does not mean the person is sick. However, people with colonization are at higher risk of getting an infection if they need medical care. The study authors warn that the high variability in results means one number does not fit all places.

For patients, this means that being in a hospital carries a higher risk of encountering these bacteria than being in a community setting. It does not mean a person will get infected, but it is important for hospitals to monitor these bacteria closely. The study suggests that standardized surveillance is needed. Health officials should use targeted control strategies to manage these risks. Molecular surveillance is essential to track how resistance genes change over time. Patients should talk to their doctors about infection prevention if they are in a hospital. This research highlights the need for better data collection to guide public health decisions.

What this means for you:
Hospital settings show higher CRE colonization rates than community settings based on a large analysis.

Study Details

Study typeMeta analysis
Sample sizen = 116,743
EvidenceLevel 1
PublishedJun 2026
View Original Abstract ↓
BACKGROUND: To estimate the global prevalence of carbapenem-resistant Enterobacteriaceae (CRE) colonization and identify study-level factors associated with variation in reported rates. METHODS: We conducted a systematic review and meta-analysis. Data were extracted on study characteristics, diagnostic methods, CRE species, carbapenemase genes, and risk factor analysis. Pooled prevalence was calculated using a random-effects model. Subgroup analyses and meta-regression were conducted to explore sources of heterogeneity. RESULTS: Across 89 studies (116,743 participants), pooled CRE colonization prevalence was 14% (95% CI: 11%-18%; I² = 99.96%), peaking at 33% in 2017 and declining to 8% in 2023. Vietnam had the highest (43%), US had the lowest (5%). Hospital-based (18%) and universal screening (20%) yielded higher prevalence than community-based (3%) and targeted/systematic sampling (3%-15%). Hospital setting was the only significant predictor of higher prevalence (coefficient = 0.14; P = .009). Klebsiella pneumoniae (52.8%) and Escherichia coli (44.9%) were the most common organisms; NDM (45.6%) and OXA-type (36.3%) were predominant carbapenemase genes. CONCLUSIONS: CRE colonization remains a global concern, particularly in health care settings with screening protocols. Geographic and methodological variability underscores the need for standardized surveillance and targeted control strategies. Molecular surveillance is essential to monitor resistance determinants evolution.
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