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MIRAGE syndrome in a neonate: SAMD9 mutation links 46,XY DSD with multisystem featuresRare syndrome identified in newborn with female genitalia and XY chromosomes

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Key Takeaway
Consider MIRAGE syndrome in neonates with 46,XY DSD, prematurity, growth restriction, and thrombocytopenia.

This is a case report with a literature review describing a single neonatal male with 46,XY karyotype and female external genitalia phenotype who was diagnosed with MIRAGE syndrome. The diagnosis was confirmed by the presence of SAMD9 gene mutations. The report details the patient's clinical course, which included preterm birth, respiratory distress, growth restriction, recurrent infections, skin pigmentation, feeding difficulties, thrombocytopenia, and anemia.

The authors synthesize these features to suggest that clinicians should consider MIRAGE syndrome when a neonate presents with premature birth, growth restriction, thrombocytopenia, recurrent infections, and 46,XY karyotype with female or ambiguous genitalia. The literature review component contextualizes this case within previously reported cases of MIRAGE syndrome.

Key limitations include the small sample size of a single case report, which precludes generalizability. No information on follow-up duration, adverse events, or treatment interventions is provided. The report does not establish causality beyond the genetic association.

For clinical practice, this case reinforces the importance of genetic testing for SAMD9 mutations in neonates with suggestive multisystem features and atypical genitalia. However, given the rarity of the syndrome and the evidence level, recommendations remain tentative.

Imagine a baby born with female external genitals, but with XY chromosomes typically seen in males. That's what doctors found in a newborn who also had a host of other health problems: premature birth, trouble breathing, poor growth, and frequent infections. After genetic testing, they discovered the cause: MIRAGE syndrome, a rare condition caused by mutations in the SAMD9 gene.

This case, reported by doctors, highlights the key signs of MIRAGE syndrome. Besides the unusual genital appearance, the baby had low platelets (thrombocytopenia), anemia, feeding difficulties, and dark patches on the skin. These clues can help other clinicians spot the syndrome early.

But this is just one case. A single case report can't tell us how common these features are or how the syndrome typically progresses. Still, it adds to the small pool of knowledge about this ultra-rare condition. For parents and doctors facing a similar set of symptoms, this report offers a possible explanation and a path to diagnosis.

What this means for you:
MIRAGE syndrome can cause female genitalia in a baby with XY chromosomes, along with growth and blood problems.

Common questions

What is MIRAGE syndrome?

MIRAGE syndrome is a rare genetic disorder caused by mutations in the SAMD9 gene. It can lead to a range of problems, including premature birth, growth restriction, recurrent infections, low platelets, and unusual genital development. In this case, a baby with XY chromosomes had female external genitals.

How is MIRAGE syndrome diagnosed?

Diagnosis is confirmed through genetic testing that finds a mutation in the SAMD9 gene. Doctors may suspect MIRAGE syndrome based on a combination of symptoms, such as premature birth, growth problems, recurrent infections, low platelets, and ambiguous or female genitalia in a baby with XY chromosomes.

What are the main symptoms of MIRAGE syndrome?

Key symptoms reported in this case include preterm birth, respiratory distress, growth restriction, recurrent infections, skin pigmentation, feeding difficulties, low platelets (thrombocytopenia), and anemia. The baby also had 46,XY karyotype (male chromosomes) but female external genitalia.

Is this finding based on strong evidence?

No, this is a single case report, which is the weakest type of evidence. It describes one baby's experience and cannot be generalized to all people with MIRAGE syndrome. Larger studies are needed to confirm these features and understand the full range of symptoms.

Study Details

Study typeSystematic review
EvidenceLevel 1
PublishedJun 2026
View Original Abstract ↓
BackgroundMIRAGE syndrome is a severe congenital disease affecting multiple systems, caused by functional variants in the SAMD9 gene. It is characterized by myelodysplasia, infections, growth restriction, adrenal hypoplasia, genital phenotypes, and enteropathy. There are few reports of neonatal MIRAGE syndrome. This study presents a rare case of 46,XY karyotype with distinct female external genitalia phenotype and provides a comprehensive literature review of infants under 1 year of age diagnosed with MIRAGE syndrome caused by SAMD9 gene mutations.Case presentationThis article reports a sporadic case of neonatal MIRAGE syndrome confirmed by genetic diagnosis. The patient had a 46, XY karyotype and presented predominantly with female external genitalia, along with preterm birth, respiratory distress, growth restriction, recurrent infections, skin pigmentation, feeding difficulties, thrombocytopenia, anemia, and other manifestations.ConclusionIn clinical practice, when encountering newborns with unexplained premature birth, growth restriction, thrombocytopenia, recurrent infections, and a karyotype of 46, XY but with female or ambiguous external genitalia, clinicians can, based on the experience from this case, differentiate from MIRAGE syndrome and may further perform genetic testing to clarify the etiology.
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