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Meta-analysis finds no significant gut microbiome differences in hypoestrogenic versus euestrogenic womenLarge review finds no clear gut microbiome differences in women with low estrogen

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Key Takeaway
Interpret the lack of consistent gut microbiome differences in hypoestrogenic women with caution due to study heterogeneity.

This systematic review and meta-analysis synthesized observational evidence comparing gut microbiome composition between hypoestrogenic women (post-menopausal or with premature ovarian insufficiency) and euestrogenic pre-menopausal controls. The analysis included data from 1,267 hypoestrogenic women (45 with POI, 1,222 post-menopausal) and 463 euestrogenic controls. The primary exposure was hypoestrogenic status, with the comparator being euestrogenic status.

The primary outcome was α-diversity (Shannon index), with secondary outcomes including relative abundances of Bacteroidetes and Firmicutes and their ratio. The meta-analysis found no significant differences between groups for any of these metrics: α-diversity (p=0.990), Bacteroidetes abundance (p=0.440), Firmicutes abundance (p=0.110), and the Bacteroidetes to Firmicutes ratio (p=0.400). Effect sizes and absolute numbers were not reported.

Safety and tolerability data were not reported. Key limitations include substantial statistical heterogeneity (I² 61-99%), limited control for confounding factors, and variability in the methodological quality of the included studies. The evidence is observational, and the findings should be interpreted with caution due to these methodological constraints. This analysis does not support consistent differences in gut microbiome diversity or major bacterial phyla based on estrogen status alone.

Researchers conducted a systematic review and meta-analysis to see if women with low estrogen levels have different gut bacteria compared to women with normal estrogen levels. They combined data from 45 women with premature ovarian insufficiency, 1,222 post-menopausal women, and 463 pre-menopausal women with normal estrogen levels. The goal was to understand if hormonal changes affect the gut microbiome.

The analysis found no significant differences in the overall diversity of gut bacteria or in the relative amounts of two major bacterial groups, Bacteroidetes and Firmicutes, between the groups. The ratio of these two bacterial types also showed no clear difference. All comparisons showed no statistically significant results.

It is important to be careful with these results because the individual studies included in this review were very different from each other, a problem known as high heterogeneity. The studies also had limited control for other factors that affect gut bacteria, like diet and lifestyle, and varied in their scientific quality. This means the finding of 'no difference' may not be definitive.

Readers should understand that this large review of existing evidence does not support the idea that low estrogen consistently changes the gut microbiome in a specific way. More carefully controlled research is needed to answer this question with greater certainty.

What this means for you:
A major review found no evidence that low estrogen levels consistently alter gut bacteria, but the underlying studies had significant limitations.

Study Details

Study typeMeta analysis
EvidenceLevel 1
PublishedApr 2026
View Original Abstract ↓
BackgroundEstrogens have been proposed as modulators of gut microbiome (GM) composition, yet evidence from observational studies remains inconsistent.ObjectiveThis meta-analysis aimed to systematically summarise existing evidence on GM alterations in hypoestrogenic women – post-menopausal or premature ovarian insufficiency (POI) – compared to euestrogenic pre-menopausal controls.MethodsPubMed, SCOPUS and Embase were searched through December 2024 for studies comparing GM characteristics between hypoestrogenic and pre-menopausal women. Primary outcome was α-diversity (Shannon index). Secondary outcomes included relative abundances of Bacteroidetes, Firmicutes, and the Bacteroidetes to Firmicutes ratio. Random-effects models were used for data synthesis.ResultsOut of 1092 studies screened, 7 met the inclusion criteria (n = 45 women with POI, n = 1222 post-menopausal women, n = 463 eustrogenic controls). No significant differences were observed in α–diversity (p=0.990), Bacteroidetes (p=0.440), or Firmicutes abundance (p=0.110) between hypoestrogenic and euestrogenic groups, irrespective of POI or postmenopause. Similarly, the Bacteroidetes to Firmicutes ratio showed no significant difference between the groups (p=0.400). Study heterogeneity was high (I² 61-99%).ConclusionCurrent evidence does not support consistent differences in GM diversity or major bacterial phyla between hypoestrogenic and euestrogenic women. Given the substantial heterogeneity, limited control of confounding factors, and variability in methodological quality, these findings should be interpreted with caution. High-quality, well-controlled studies are needed to better define the relationship between estrogen status and the GM.
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